PAPERS

[Google Scholar Link]

+: co-first author

*: co-corresponding author

2024 

70. H Lee, J Song, SW Seo*.

Engineering Yarrowia lipolytica for the production of β-carotene by carbon and redox rebalancing

submitted

69.  J Yim+, SW Cho+, S Park+, S Han, TH Kim, SW Seo*.

Unveiling the transcriptional profile of the microbial community under simulated microgravity by co-culturing probiotic Escherichia coli Nissle 1917 with pathogenic Pseudomonas aeruginosa PAO1 

submitted

68. S Han+, JY Park+, YH Han+, I Bang, OK Lee, JS Hyung, J-G Na*, EY Lee*, D Kim*, SW Seo*.

Genome-wide regulon of NtrC reveals genetic regulation under nitrogen limitation in Methylomonas sp. DH-1

submitted

67. S Yang+, J Yang+, S Park+, YH Han+, G Kim, SW Seo*, NK Lee*.

Unblocked transcription initiation requires transcription–translation coupling at the promoter-proximal region in Escherichia coli

submitted

66. YH Han+, HJ Kim+, K Kim, J Yang, SW Seo*.

Synthetic translational coupling system for accurate and predictable polycistronic gene expression control in bacteria

submitted

65. G Park, J Yang*, SW Seo*.

Dynamic control of the plasmid copy number without antibiotics in Escherichia coli

accepted

64. S Woo+, YH Han+, D Baek+, HK Lee+, MH Noh, S Han, HG Lim, GY Jung*, SW Seo*.

Generation of a Vibrio-based platform for efficient conversion of raffinose through adaptive laboratory evolution on a solid medium

Metab. Eng. 86:300-307 (2024)

63. GY Kim+, J Yang+, YH Han, SW Seo*.

Synthetic redesign of Escherichia coli W for faster metabolism of sugarcane molasses

Microb. Cell Fact. 23:242 (2024)

62. G Kim, HJ Kim, K Kim, HJ Kim, J Yang, SW Seo*.

Tunable translation-level CRISPR interference by dCas13 and engineered gRNA in bacteria

Nat. Commun. 15:5319 (2024)

61. Y Lee, K Kim, M Choi, SW Seo*.

Natural transformation of Vibrio natriegens with large genetic cluster enables alginate assimilation for isopentenol production 

Bioresour. Technol. 406: 130988 (2024)

2023 

60. S Cho, H Lee, YH Han, TS Park, SW Seo*, TH Park*.

Design of an effective small expression tag to enhance GPCR production in E. coli-based cell-free and whole cell expression systems

Protein Sci. 32(12):e4839 (2023)

59. G Byun+, J Yang+, SW Seo*.

CRISPRi-mediated tunable control of gene expression level with engineered single-guide RNA in Escherichia coli

Nucleic Acids Res. 51(9):4650-4659 (2023)

58. J Son, H Lee, T Lee, H Sohn, SJ Park, J-G Na, SW Seo, JW Lee, HY Yoo*, C Park*.

Novel synthetic pathway for methyl 3-hydroxybutyrate from β-hydroxybutyric acid and methanol by enzymatic esterification

J. Ind. Eng. Chem. 123:355-360 (2023)

57. J Kim+, E-J Lee+, K-E Lee, Y-H Nho, J Ryu, SY Kim, JK Yoo, S Kang*, SW Seo*.

Lipid extract derived from newly isolated Rhodotorula toruloides LAB-07 for cosmetic applications

Comput. Struct. Biotechnol. J. 21:2009-17 (2023)

56. S Lee , S Hong, J Park, Y Koh, H Lee, J Yang*, SW Seo*, SJ Kim*.

dCas9-mediated PCR-free detection of oncogenic mutation by nonequilibrium nanoelectrokinetic selective preconcentration

Anal. Chem. 95(11):5045-52 (2023)

55. GY Kim+, J Kim+, G Park, HJ Kim, J Yang*, SW Seo*.

Synthetic biology tools for engineering Corynebacterium glutamicum

Comput. Struct. Biotechnol. J. 21:1955-65 (2023)

54. S Kim, HR Kim, HJ Oh, K-T Lee, Y Um, DW Kim, SW Seo, C Park*, SW Kim*.

Undefined xylose media extracted from biorefinery waste for enhanced and eco-friendly production of cephalosporin C by Acremonium chrysogenum M35

GCB Bioenergy. 15(5):731-742 (2023)

53.  YH Han+, G Kim+, SW Seo*.

Programmable synthetic biology tools for developing microbial cell factories

Curr. Opin. Biotechnol. 79:102874 (2023)

52. JY Pakr, S-M Lee, A Ebrahim, ZK Scott-Nevros, J Kim, L Yang, A Sastry, SW Seo*, BO Palsson*, D Kim*.

Model-driven experimental design workflow expands understanding of regulatory role of Nac in Escherichia coli

NAR Genom. Bioinform. 5(1):lqad006 (2023)

51. D Choe, U Kim, S Hwang, SW Seo, D Kim, S Cho, B Palsson, B-K Cho*.

Revealing causes for false-positive and false-negative calling of gene essentiality in Escherichia coli using transposon insertion sequencing

mSystems. 23;8(1):e0089622 (2023)

2022 

50. S Woo+, HG Lim+, YH Han+, S Park, MH Noh, D Baek, JH Moon, SW Seo*, GY Jung*.

A Vibrio-based microbial platform for accelerated lignocellulosic sugar conversion

Biotechnol. Biofuels Bioprod. 15(1):58 (2022)

49. Y Baek, S Lee, J Son, T Lee, J-M Oh, SH Lee, HU Kim, SW Seo, SJ Park*, HY Yoo*, C Park*.

Efficient production of naringin acetate with different acyl donors via enzymatic transesterification by lipases

Int. J. Environ. Res. Public Health  19(5), 2972 (2022)

2021

48. S Kim, SH Jin, HG Lim, B Lee, J Kim, J Yang, SW Seo, C-S Lee*, GY Jung*.

Synthetic cellular communication-based screening for strains with improved 3-hydroxypropionic acid secretion

Lab Chip  21(22):4455-4463 (2021)

47. JY Seok+, YH Han+, J-S Yang, J Yang, HG Lim, SG Kim, SW Seo*, GY Jung*.

Synthetic biosensor accelerates evolution by rewiring carbon metabolism toward specific metabolite

Cell Rep. 36(8): 109589 (2021)

46. S Park+, SW Cho+, Y Lee+, M Choi, J Yang, H Lee, SW Seo*.

Engineering Vibrio sp. SP1 for the production of carotenoids directly from brown macroalgae

Comput. Struct. Biotechnol. J. 19:1531-1540 (2021)

45. J Yang+, YH Han+, J Im, SW Seo*.

Synthetic protein quality control to enhance full-length translation in bacteria

Nat. Chem. Biol. 17:421-427 (2021)

2020

44. J Tan, AV Sastry, KS Fremming, SP Bjørn, A Hoffmeyer, SW Seo, BG Voldborg, BO Palsson*.

Independent component analysis of E. coli's transcriptome reveals the cellular processes that respond to heterologous gene expression

Metab. Eng. 61:360-368 (2020)

43. J Yim+, SW Cho+, B Kim, S Park, YH Han, SW Seo*.

Transcriptional profiling of the probiotic Escherichia coli Nissle 1917 strain under simulated microgravity

Int. J. Mol. Sci. 21(8):2666 (2020)

42. J Choi, S Baek, HC Kim, J-H Chae, Y Koh, SW Seo, H Lee*, SJ Kim*.

Nanoelectrokinetic selective preconcentration based on ion concentration polarization

BioChip J. 14:100-109 (2020)

41. SW Cho+, J Yim+, SW Seo*.

Engineering tools for the development of recombinant Lactic Acid Bacteria

Biotechnol. J. 15(6):1900344 (2020)

2019

40. T Lee*, J Kim, I Nam, Y Lee, HE Kim, H Sohn, S-E Kim, J Yoon, SW Seo, M-H Lee*, C Park*.

Fabrication of troponin I biosensor composed of multi-functional DNA structure/Au nanocrystal using electrochemical and localized surface plasmon resonance dual-detection method

Nanomaterials. 9(7):1000 (2019) 

39. L Yang, N Mih, A Anand, JH Park, J Tan, JT Yurkovich, JM Monk, CJ Lloyd, TE Sandberg, SW Seo, D Kim, AV Sastry, P Phaneuf, Y Gao, JT Broddrick, K Chen, D Heckmann, R Szubin, Y Hefner, AM Feist, BO Palsson*.

Cellular responses to reactive oxygen species are predicted from molecular mechanisms

Proc. Natl. Acad. Sci. U.S.A. 116(28): 14368-14373 (2019)

38. SW Cho+, J Yang+, S Park, B Kim, SW Seo*.

Complete genome sequence of lactic acid bacterium Pediococcus acidilactici strain ATCC 8042, an autolytic anti-bacterial peptidoglycan hydrolase producer

Biotechnol. Bioproc. Eng. 24(3): 483-487 (2019) 

37. HG Lim+, DH Kwak+, S Park+, SH Woo+, J-S Yang, CW Kang, B Kim, MH Noh, SW Seo*, GY Jung*.

Vibrio sp. dhg as a platform for the biorefinery of brown macroalgae

Nat. Commun. 10:2486 (2019)

36. J Yang, B Kim, GY Kim, GY Jung*, SW Seo*.

Synthetic biology for evolutionary engineering: from perturbation of genotype to acquisition of desired phenotype

Biotechnol. Biofuels 12:113 (2019)

35. S Jang, HG Lim, J Yang, SW Seo*, GY Jung*.

Synthetic regulatory tools to engineer microbial cell factories for chemical production

Current Developments in Biotechnology and Bioengineering: Synthetic Biology, Cell Engineering and Bioprocessing Technologies (Chapter 5) Elsevier (2019).

2018

34. HG Lim+, S Jang+, S Jang, SW Seo*, GY Jung*.

Design and optimization of genetically encoded biosensors for high-throughput screening of chemicals

Curr. Opin. Biotechnol. 54:18-25 (2018)

33. H Lee+, J Cho+, E Jeong+, S Baek, HC Kim, J-H Chae, Y Koh, SW Seo, J-S Kim*, and SJ Kim*

dCas9-mediated Nanoelectrokinetic Direct Detection of Target Gene for Liquid Biopsy

Nano Lett. 18(12):7642–7650 (2018)

32. Y Gao, JT Yurkovich, SW Seo, I Kabimoldayev, A Drager, K Chen, A Sastry, X Fang, N Mih, L Yang, J Eichner, B-K Cho, D Kim*, BO Palsson*. 

Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655

Nucleic Acids Res. 46(20):10682-10696 (2018)

31. S Jang, S Jang, J Yang, SW Seo*, GY Jung*.

RNA-based dynamic genetic controllers: development strategies and applications.

Curr. Opin. Biotechnol. 53:1-11 (2018) 

30. CW Kang+, HG Lim+, J Yang, MH Noh, SW Seo*, GY Jung*.

Synthetic auxotrophs for stable and tunable maintenance of plasmid copy number

Metab. Eng. 48:121-128 (2018)

29. H Lee+, J Kim+, J Yang+, SW Seo*, SJ Kim*.

Diffusiophoretic exclusion of colloidal particles for continuous water purification

Lab Chip 18(12):1713-1724 (2018) [Inside Front Cover]

28. D Kim+, SW Seo+, Y Gao+, H Nam, GI Guzman, B-K Cho, BO Palsson*.

Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP

Nucleic Acids Res. 46(6):2901-2917 (2018) [HanBitSa]

2017

27. MH Noh+, HG Lim+, S Park, SW Seo*, GY Jung*.

Precise flux redistribution to glyoxylate cycle for 5-aminolevulinic acid production in Escherichia coli.

Metab. Eng. 43:1-8 (2017) 

26. SW Seo+,*, Y Gao+, D Kim+, R Szubin, J Yang, B-K Cho, BO Palsson*.

Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655.

Sci. Rep. 7:2181 (2017)

25. Y Jeong, H Shin, SW Seo, D Kim, S Cho, B-K Cho.

Elucidation of bacterial translation regulatory networks.

Curr. Opin. Sys. Biol. 2: 83-89 (2017)

24. DH Kwak+, HG Lim+, J Yang, SW Seo*, GY Jung*. 

Synthetic redesign of Escherichia coli for cadaverine production from galactose.

Biotechnol. Biofuels 10:20 (2017)

2014

19. SW Seo+, D Kim+, H Latif+, EJ O’Brien, R Szubin, BO Palsson.

Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli.

Nat. Commun. 5:4910 (2014) [HanBitSa]

18. SW Seo+, J-S Yang+, H-S Cho, J Yang, SC Kim, JM Park, S Kim, GY Jung.

Predictive combinatorial design of mRNA translation initiation region for systematic optimization of gene expression levels.

Sci. Rep. 4:4515 (2014)

17. H Kim, SW Seo, J Lee, GY Jung, K Lee.

The synthesis of single-walled carbon nanotubes with narrow diameter distribution using polymerized hemoglobin.

Carbon. 69: 588-94 (2014)

2013

16. JH Lim+, SW Seo+, SY Kim, GY Jung.

Model-driven rebalancing of the intracellular redox state for optimization of a heterologous n-butanol pathway in Escherichia coli.

Metab. Eng. 20:56-62 (2013)

15. SW Seo, J Yang, BE Min, S Jang, JH Lim, HG Lim, SC Kim, SY Kim, J Jeong, GY Jung.

Synthetic biology: tools to design microbes for the production of chemicals and fuels.

Biotechnol. Adv. 31(6):811-7. (2013) [HanBitSa]

14. JM Baek, S Mazumdar, SW Lee, MY Jung, JH Lim, SW Seo, GY Jung, MK Oh. 

Butyrate production in engineered Escherichia coli with synthetic scaffolds. 

Biotechnol. Bioeng. 110(10): 2790-4 (2013)

13. SW Seo, GY Jung.

Synthetic regulatory RNAs as tools for engineering biological systems: design and applications.

Chem. Eng. Sci. 103:36-41 (2013)

12. JH Lim+, SW Seo+, SY Kim, GY Jung.

Refactoring redox cofactor regeneration for high-yield biocatalysis of glucose to butyric acid in Escherichia coli.

Bioresour. Tech. 135:568-73 (2013)

11. HG Lim+, SW Seo+, GY Jung.

Engineered Escherichia coli for simultaneous utilization of galactose and glucose.

Bioresour. Tech. 135:564-7 (2013)

10. J Yang+, SW Seo+, S Jang, S Shin, C Lim, T Roh, GY Jung. 

Synthetic RNA devices to expedite the evolution of metabolite-producing microbes. 

Nat. Commun. 4:1413 (2013) [Press]

9. SW Seo+, J-S Yang+, I Kim, J Yang, BE Min, S Kim, GY Jung.

Predictive design of mRNA translation initiation region to control prokaryotic translation efficiency.

Metab. Eng. 15:67-74 (2013)

2012

8. J-S Yang+, SW Seo+, S Jang, GY Jung, S Kim.

Rational engineering of enzyme allosteric regulation through sequence evolution analysis.

PLoS Comp. Biol. 8(7):e1002612 (2012)

7. H Cho+, SW Seo+, YM Kim, GY Jung, JM Park.

Engineering glyceraldehyde-3-phosphate dehydrogenase for switching control of glycolysis in Escherichia coli.

Biotechnol. Bioeng. 109(10) 2612-9 (2012)

6. BE Min+, SW Seo+, GY Jung.

Switching control of an essential gene for reprogramming of cellular phenotypes in Escherichia coli.

Biotechnol. Bioeng. 109(7) 1875-80 (2012)

5. SW Seo, SC Kim, GY Jung.

Synthetic Regulatory Tools for Microbial Engineering.

Biotechnol. Bioprocess Eng. 17(1) 1-7 (2012)

2010

3. GW Shin, HS Hwang, SW Seo, MH Oh, CY Ryu, CJ Salvo, S Feldman, J Doh, GY Jung.

A novel pathogen detection system based on high-resolution CE-SSCP using a triblock copolymer matrix.

J. Sep. Sci. 33(11), 1639-43 (2010)

2007

1. YS Park, SW Seo, S Hwang, HS Chu, JH Ahn, TW Kim, DM Kim, GY Jung.

Design of 5’-untranslated region variants for tunable expression in Escherichia coli.

Biochem. Biophys. Res. Commun. 356(1),136-41 (2007)